竹荪多糖分离及其生物活性

本文综述了竹荪多糖的分离及增强免疫、抗肿瘤等生物活性。     

一个具有扩散和时滞的捕食模型的持久性与周期解的存在性

对一类在斑块环境下具有Beddington型功能性反应和时滞现象的非自治捕食系统进行了研究,证明系统在适当的条件下是永久持续生存的;利用重合度理论,得到了一组保证该系统存在正周期解的充分条件．     

MADS-box基因家族基因重复及其功能的多样性

基因的重复(duplication)及其功能的多样性(diversification)为生物体新的形态进化提供了原材料。MADS-box基因在植物(特别是被子植物)的进化过程中发生了大规模的基因重复事件而形成一个多基因家族。MADS-box基因家族的不同成员在植物生长发育过程中起着非常重要的作用,在调控开花时间、决定花分生组织和花器官特征以及调控根、叶、胚珠及果实的发育中起着广泛的作用。探讨MADS-box基因家族的进化历史有助于深入了解基因重复及随后其功能分化的过程和机制。本文综述了MADS-box基因家族基因重复及其功能分化式样的研究进展。     

Functional gene clustering via gene annotation sentences, MeSH and GO keywords from biomedical literature

Gene function annotation remains a key challenge in modern biology. This is especially true for high-throughput techniques such as gene expression experiments. Vital information about genes is available electronically from biomedical literature in the form of full texts and abstracts. In addition, various publicly available databases (such as GenBank, Gene Ontology and Entrez) provide access to gene-related information at different levels of biological organization, granularity and data format. This information is being used to assess and interpret the results from high-throughput experiments. To improve keyword extraction for annotational clustering and other types of analyses, we have developed a novel text mining approach, which is based on keywords identified at the level of gene annotation sentences (in particular sentences characterizing biological function) instead of entire abstracts. Further, to improve the expressiveness and usefulness of gene annotation terms, we investigated the combination of sentence-level keywords with terms from the Medical Subject Headings (MeSH) and Gene Ontology (GO) resources. We find that sentence-level keywords combined with MeSH terms outperforms the typical 'baseline' set-up (term frequencies at the level of abstracts) by a significant margin, whereas the addition of GO terms improves matters only marginally. We validated our approach on the basis of a manually annotated corpus of 200 abstracts generated on the basis of 2 cancer categories and 10 genes per category. We applied the method in the context of three sets of differentially expressed genes obtained from pediatric brain tumor samples. This analysis suggests novel interpretations of discovered gene expression patterns.     

Bayes factor for testing between different structures of random genetic groups: A case study using weaning weight in Bruna dels Pirineus beef cattle

The implementation of genetic groups in BLUP evaluations accounts for different expectations of breeding values in base animals. Notwithstanding, many feasible structures of genetic groups exist and there are no analytical tools described to compare them easily. In this sense, the recent development of a simple and stable procedure to calculate the Bayes factor between nested competing models allowed us to develop a new approach of that method focused on compared models with different structures of random genetic groups. The procedure is based on a reparameterization of the model in terms of intraclass correlation of genetic groups. The Bayes factor can be easily calculated from the output of a Markov chain Monte Carlo sampling by averaging conditional densities at the null intraclass correlation. It compares two nested models, a model with a given structure of genetic groups against a model without genetic groups. The calculation of the Bayes factor between different structures of genetic groups can be quickly and easily obtained from the Bayes factor between the nested models. We applied this approach to a weaning weight data set of the Bruna dels Pirineus beef cattle, comparing several structures of genetic groups, and the final results showed that the preferable structure was an only group for unknown dams and different groups for unknown sires for each year of calving.     

Separation and quantification of the cellular thiol pool of pea plants treated with heat, salt and atrazine

A novel procedure for the separation of the cellular thiol pool according to the molecular weight and localization of compounds with sulphydryl groups is presented. This simple and rapid method allows the differentiation of thiols into three major fractions-low molecular weight (LMT, primarily glutathione and free cysteine), protein-bound (TPT) and pellet-bound (PBT, associated with cell walls and broken organelles). Moreover, determination of the ratio between surface (readily reactive) thiols (ATG) and those that are more or less buried in the protein structure (BTG) can be achieved. In intact pea leaves, the amounts of the total thiols (LMT+PBT+TPT) varies from 2.5 to 4.8 micromol/g of fresh material. The data for LMT, PBT and TPT were related to each other in the approximate ratio 1:2:7. Treatments of pea plants with high temperature, salinity and low amounts of atrazine affect these sulphydryl types differently. For a greater understanding of the applicability of this method to physiological research, the main mechanisms leading to alterations in the cellular thiol pool are discussed. Furthermore, it is suggested that the proportion of available to buried thiols (ATG/BTG) in proteins could be used as a convenient marker for stress impacts.     

Beyond the sentence given

A central and influential idea among researchers of language is that our language faculty is organized according to Fregean compositionality, which states that the meaning of an utterance is a function of the meaning of its parts and of the syntactic rules by which these parts are combined. Since the domain of syntactic rules is the sentence, the implication of this idea is that language interpretation takes place in a two-step fashion. First, the meaning of a sentence is computed. In a second step, the sentence meaning is integrated with information from prior discourse, world knowledge, information about the speaker and semantic information from extra-linguistic domains such as co-speech gestures or the visual world. Here, we present results from recordings of event-related brain potentials that are inconsistent with this classical two-step model of language interpretation. Our data support a one-step model in which knowledge about the context and the world, concomitant information from other modalities, and the speaker are brought to bear immediately, by the same fast-acting brain system that combines the meanings of individual words into a message-level representation. Underlying the one-step model is the immediacy assumption, according to which all available information will immediately be used to co-determine the interpretation of the speaker's message. Functional magnetic resonance imaging data that we collected indicate that Broca's area plays an important role in semantic unification. Language comprehension involves the rapid incorporation of information in a 'single unification space', coming from a broader range of cognitive domains than presupposed in the standard two-step model of interpretation.     

Rice functional genomics research in China

Rice functional genomics is a scientific approach that seeks to identify and define the function of rice genes, and uncover when and how genes work together to produce phenotypic traits. Rapid progress in rice genome sequencing has facilitated research in rice functional genomics in China. The Ministry of Science and Technology of China has funded two major rice functional genomics research programmes for building up the infrastructures of the functional genomics study such as developing rice functional genomics tools and resources. The programmes were also aimed at cloning and functional analyses of a number of genes controlling important agronomic traits from rice. National and international collaborations on rice functional genomics study are accelerating rice gene discovery and application.     

延迟首次投喂对南方鲇(Silurus meridionalis Chen)仔鱼身体含能量、体长及游泳能力的影响

在（22.0±0.5）℃条件下,将人工孵化的南方鲇仔鱼分别于出膜后4、5、6、7天进行首次投喂（其中4d的为对照组）,首次投喂前（出膜后4d）取样测量体长、体重、身体含能量作为初始值,于出膜后7d（延迟投喂实验）和21d（继续喂养实验）分别测定体长、体重、身体所含能量和临界游泳速度。结果显示：延迟投喂实验结束时各处理组的体重、身体含能量和体长随首次投喂时间的延迟均呈下降趋势,相对临界游泳速度随首次投喂时间的延迟表现为先提高后降低的趋势,绝对临界游泳速度在延迟投喂2d以内无显著差异;继续喂养实验结束时处理组各指标逐渐接近对照组水平,两种临界游泳速度表现为同步变化趋势;另外,体长特定生长率相对百分比（SGRL%）的变化幅度小于身体含能量特定生长率相对百分比（SGRE%）的变化幅度,而绝对临界游泳速度相对百分比（Ucrit%）的变化又小于体长特定生长率相对百分比的变化。结果表明：早期食物资源的短缺会导致南方鲇仔鱼体重、身体含能量产生明显变化,体长生长速度的变化则相对较小,而短期饥饿不会显著降低南方鲇仔鱼的游泳能力。     

开封地区不同土地利用方式农田杂草群落结构及动态

2005年春、秋两季对开封地区不同土地利用方式小麦-玉米、小麦-大豆轮作地,葡萄地,弃耕地中杂草进行调查,统计分析各杂草群落中物种相似系数、物种相对多度分布、功能群相对多度和生物多样性。杂草功能群分为单子叶短期生植物（MA）、双子叶短期生植物（DA）、单子叶多年生植物（MP）及双子叶多年生植物（DP）4个功能类群。调查共记录杂草种类71种,隶属27个科;春季51种、共同种7个,秋季36种、共同种8个。不同土地利用方式杂草群落相似系数春季各群落间0．3～0．5,秋季玉米地-大豆地、秋葡萄地-弃耕地最高,分别是0．73和0．70;季节间小麦地与秋季各杂草群落间相似系数小于0．1。春、秋季弃耕地物种-相对多度分布曲线下降缓慢,常见种和偶见种多、相对多度分配分别占61．32％和47．09％;小麦地、玉米地、大豆地和葡萄地优势种突出。春季DA功能群占优势,小麦地高达81．06％;MP功能群较少,小麦地缺少MP。秋季玉米地和大豆地杂草功能群分布较均衡,葡萄地以DA和MP为主、分别为42．34％和42．64％;弃耕地MA、DA和MP平均,为33．63、31．07和30．25％。多样性指数为春、秋季弃耕地最高1．76和1．72,玉米、大豆地次之为1．55和1．52,春、秋葡萄地1．49、1．30,小麦地最低1．12。结论：不同土地利用方式杂草群落种群构成不同,功能群相对多度分配格局以免耕农田玉米地、大豆地和葡萄地杂草功能群分布均衡;功能群季节变化明显,趋势为MP上升,DA下降。不同土地利用方式土地多样性等级为小麦地〈葡萄地〈大豆地和玉米地〈弃耕地。